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About 15 results for "rpkm"

Multi-Tissue Omics Analyses Reveal Molecular Regulatory Networ...

Introduction Puberty is the process by which animals mature into an adult capable of sexual reproduction [1] . In heifers, puberty is characterized by the dynamic and biphasic response of the hypothalamus and pituitary gland to gonadal steroids and ..., 2 days ago

Assessment of the Impact of Using a Reference Transcriptome in Mapping Short RNA-Seq Reads

Introduction In recent years, RNA-Seq has become a popular and powerful approach for transcriptome profiling [1] [6] . RNA-Seq not only has considerable advantages for examining transcriptome fine structurefor example, in the detection of novel ...
 Plosone.org2 weeks ago

Characterization of Transcriptional Complexity during Adipose Tissue Development in Bovines of Different Ages and Sexes

Abstract Background Adipose tissue has long been recognized to play an extremely important role in development. In bovines, it not only serves a fundamental function but also plays a key role in the quality of beef and, consequently, has drawn ...
 Plosone.org3 weeks ago

Transcriptome Analysis by Illumina High-Throughout Paired-End Sequencing Reveals the Complexity of Differential Gene Expression during In Vitro Plantlet Growth and Flowering in Amaranthus tricolor L.

Introduction Amaranthus L., a genus of approximately 70 C 4 dicotyledonous herbaceous plant species, is widely distributed throughout warm temperate and tropical regions of the world [1] , [2] . Many amaranth species are economically important crop ...
 Plosone.org4 weeks ago

Transcriptome Profiling Reveals Higher Vertebrate Orthologous of Intra-Cytoplasmic Pattern Recognition Receptors in Grey Bamboo Shark

by Tirumurugaan Krishnaswamy Gopalan, Pradheepa Gururaj, Ravi Gupta, Dhinakar Raj Gopal, Preeti Rajesh, Balachandran Chidambaram, Aravindan Kalyanasundaram, Raja Angamuthu From an immunologist perspective, sharks are an important group of jawed ...
 Plosone.org1 month ago

Comparison of the Transcriptomes of Ginger (Zingiber officinale Rosc.) and Mango Ginger (Curcuma amada Roxb.) in Response to the Bacterial Wilt Infection

Abstract Bacterial wilt in ginger ( Zingiber officinale Rosc.) caused by Ralstonia solanacearum is one of the most important production constraints in tropical, sub-tropical and warm temperature regions of the world. Lack of resistant genotype adds ...
 Plosone.org1 month ago

Genome-Wide Binding of MBD2 Reveals Strong Preference for Highly Methylated Loci

Abstract MBD2 is a subunit of the NuRD complex that is postulated to mediate gene repression via recruitment of the complex to methylated DNA. In this study we adopted an MBD2 tagging-approach to study its genome wide binding characteristics. We ...
 Plosone.org1 month ago

Characterization of the Floral Transcriptome of Moso Bamboo (Phyllostachys edulis) at Different Flowering Developmental Stages by Transcriptome Sequencing and RNA-Seq Analysis

Introduction Transcriptome sequencing is a convenient way of rapidly obtaining information on the expressed fraction of a genome [1] . Next-generation sequencing (NGS) technology, such as the Illumina Solexa, Roche 454 and ABI SOLiD platforms, has ...
 Plosone.org1 month ago

MicroRNAs shape circadian hepatic gene expression on a transcriptome-wide scale

Introduction Circadian clocks orchestrate daily oscillations in mammalian behaviour, physiology, and gene expression. In mammals, a master pacemaker in the brain's suprachiasmatic nucleus (SCN) synchronises subsidiary oscillators present in most ...
 Elifesciences1 month ago

ReadXplorer--visualization and analysis of mapped sequences

Motivation: Fast algorithms and well-arranged visualizations are required for the comprehensive analysis of the ever-growing size of genomic and transcriptomic next-generation sequencing data. Results: ReadXplorer is a software offering ...
 Bioinformatics2 months ago
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